Chemistry

Objectives

The first goal of EMODnet Chemistry is to collect and validate data on the state of the seas and oceans and make them freely available and interoperable. To this end, the partnership needs to manage the heterogeneity, complexity, quality and large volume of observational datasets on seawater quality, biota contamination, sediment quality and potential pollution.

Second, EMODnet Chemistry generates and publishes standardised, harmonised and quality-controlled data collections and reliable derived data products. These are all relevant for the implementation of European Union (EU) marine policies such as the Marine Strategy Framework Directive (MSFD), Water Framework Directive, and Maritime Spatial Planning Directive. Specifically, EMODnet Chemistry contributes to Descriptors 5 (eutrophication), 8 (chemical pollution), 9 (contaminants in seafood) and 10 (marine litter) of the MSFD, as testified by a number of Use Cases.

MSFD Directive

The MSFD was adopted by the EU in 2008. The objectives are to achieve Good Environmental Status (GES) of EU marine waters by 2020 and to protect the resource base on which marine-related economic and social activities depend.

The MSFD is a cyclical process including different phases, as follows:

• Initial assessment of the environmental status, impacts, and socioeconomic analysis of human activities;
• Determination of GES;
• Establishment of targets and associated criteria and indicators;
• Establishment of a monitoring programme;
• Development of a programme of measures to achieve or maintain GES.

The MSFD criteria and indicators are defined on the basis of 11 qualitative descriptors relating to: 1. biodiversity, 2. non-indigenous species, 3. commercially exploited fish and shellfish populations, 4. elements of the marine food web, 5. eutrophication, 6. seabed integrity, 7. alteration of hydrographic conditions, 8. contaminant concentrations, 9. contaminants in fish/seafood for human consumption, 10. marine litter, and 11. energy inputs including underwater noise.

The MSFD identifies different European marine regions and sub-regions according to their geographical and ecological characteristics to support the development of marine strategies, as shown in the figure below.

EMODnet Chemistry data harvesting covers an extensive geographical marine area, including all MSFD regions and subregions (see figure below).

MSFD - European marine regions and sub-regions (Source : EEA - Delineation of the MSFD Article 4 marine regions and subregions (Version of 16th May 2017 )

EMODnet Chemistry's geographical coverage

As the MSFD takes an adaptive management approach, marine strategies must be kept up to date and reviewed at the end of each 6-year cycle. An evaluation report on the first implementation period (2012–2017) was published by the European Commission with the participation of all Member States in June 2020. This report shows that although GES was not achieved on time, the MSFD has contributed to a better understanding of the pressures and impacts of human activities on marine ecosystems, and to the adoption of new measures to address them, such as the directive on single-use plastics. The MSFD will be reviewed by 2023 with a view to possible amendments and additions.

EMODnet Chemistry focuses on four main themes:

• Eutrophication;
• Ocean acidification;
• Contaminants;
• Marine litter.

Currently, six major European sea regions are covered: the Arctic Ocean (Norwegian Sea including Barents Sea), Baltic Sea, Northeast Atlantic Ocean (Celtic Sea, Iberian coast and Bay of Biscay, and Macaronesia), North Sea, Black Sea, and Mediterranean Sea.

For more information, users can see the relevant Documentation, including:

• Guidelines that includes technical documents, such as specifications and user manuals, which explain in detail the EMODnet Chemistry activity;
• Reports to EU that includes all documents, describing the EMODnet Chemistry work, which are periodically delivered to the EMODnet Secretariat and DG MARE;

Information can also be found in News, Events and Communication material, including a Promotional Video.

Key services

A range of services and functionalities are provided to users for i) identifying and requesting access to the chemistry datasets that are gathered by EMODnet Chemistry, and ii) viewing, analysing, and downloading chemistry data products that are generated by EMODnet Chemistry:

1. Data Discovery and Access Service is the interface of SeaDataNet to search for, narrow down queries, and download selections of measurement data.

   Chemistry CDI Data Discovery and Access service

   The Chemistry CDI Data Discovery and Access Service is managed by SeaDataNet and provides users with highly detailed insight into the availability and geographical distribution of chemistry in situ data (concerning eutrophication, contamination, marine pollution, and acidification), acquired and managed by a growing group of national data centres and data providers from research institutes, monitoring agencies, private companies and civil society. It also provides a unified user interface for requesting access and downloading individual datasets. The CDI metadata are in the public domain and freely browsable for all users. Most of these chemical observation datasets can also be downloaded freely; however, there are also datasets which are restricted and require obtaining permission from the owners. Anyway, requests for downloading are arranged through a shopping mechanism, which requires initial registration to the SeaDataNet Marine-ID service. For detailed information on how it works, see the user manual

   

   EMODnet Chemistry CDI Data and Discovery Access Service (SeaDataNet service)

   CDI Data Discovery and Access Service 
2. Products Catalogue service provides functionality to search and browse metadata of chemistry data products and includes links to viewing and download.

3. webODV Data Explorer and Extractor allows users to create subsets, perform scientific analyses, generate various graphs, and download datasets in various formats from the validated aggregated data collections of EMODnet Chemistry.

   webODV data explorer and extractor

   The webODV data Explorer and Extractor tool is developed and managed by the Alfred Wegener Institute (Bremerhaven, Germany) for EMODnet Chemistry. This service is constantly being extended to facilitate the exploration, subsetting, visualisation and extraction of datasets in different formats from the EMODnet validated and aggregated Chemistry data collections for eutrophication and contaminants. These collections are generated by the Regional Coordinators of EMODnet Chemistry, by harmonisation, standardisation and quality control of selections of data sets as provided by multiple data centres and as retrieved from the CDI Data Discovery and Access Service. EMODnet Chemistry compiles and publishes such data products regularly for all European sea basins. In addition, the Consortium uses these high-quality data products to produce maps, while the webODV service allows users to perform in-depth scientific analyses, and to prepare extracts and all kinds of visualisations, which can be used for instance for scientific papers and analytical documents and presentations. For detailed information on how it works, see the user manual 

   

   EMODnet Chemistry webODV data Explorer and Extractor tool: Float Chlorophyll plot.

   webODV Data Explorer and Extractor tool 
4. Marine litter tools are also available to view the distribution of beaches contained in the EMODnet Chemistry beach litter database, to generate EMODnet data formats for beach and seafloor litter, and to verify correctness.
5. Map Viewer service allows users to view, browse, and interrogate EMODnet Chemistry data and data products. Specifically, EMODnet Chemistry provides the following map layers as OGC services:
   • Interpolated maps for eutrophication status over time with animations;
   • Contaminants maps showing station locations and quality indicators;
   • Marine Litter maps showing locations, types, and volumes;
   • Availability maps for measurement datasets concerning different chemical substances and interactive links to the Data Discovery and Access service;
   • Maps showing eutrophication and contaminant concentrations based on locations from the validated aggregated data collections and with interactive links to the WebODV Data Explorer and Extractor tool
      

More details about the data products and derived map layers are provided in the following section.

Data & Products

EMODnet Chemistry draws on the extensive experience of a well-developed and ever-increasing network of 66 data centres in 32 countries, which collect and manage marine chemical data according to the FAIR principles (i.e. Findability, Accessibility, Interoperability and Reusability).

In the last decade, the Partnership has gathered over 1 million measurement data from more than 500 different data originators, mainly monitoring authorities and research institutes but also NGOs and enterprises.

The measurement data, as delivered by the originators, cover 13 groups of chemical variables within all European sea regions.

EMODnet Chemistry - CDI Data and Discovery Access Service (SeaDataNet service

In addition, EMODnet Chemistry regularly releases aggregated, standardised, and validated data, which are made available as regional and global data collections on eutrophication, contaminants, and marine litter.

EMODnet Chemistry's data collections of Contaminants, Eutrophication and Marine Litter

Contaminants data collections in the Arctic - DOI: 10.6092/bz0y-na72

Contaminants data collections in the Atlantic - DOI: 10.6092/byac-h177

Contaminants data collections in the Baltic - DOI: 10.6092/28y3-th08

Contaminants data collections in the Black Sea - DOI: 10.6092/jbge-hy83

Contaminants data collections in the Mediterranean Sea - DOI: 10.6092/vyvd-0g91

Contaminants data collections in the North Sea - DOI: 10.6092/42t8-zy38

Eutrophication data collections in the Arctic - DOI: 10.6092/xe56-z804

Eutrophication data collections in the Atlantic - DOI: 10.6092/hmh8-x461

Eutrophication data collections in the Baltic - DOI: 10.6092/w67j-4p80

Eutrophication data collections in the Black Sea - DOI: 10.6092/e9jp-ra41

Eutrophication data collections in the Mediterranean Sea - DOI: 10.6092/ep6n-tp63

Eutrophication data collections in the North Sea - DOI: 10.6092/64h8-3q06

Marine litter data collections of Beach Litter - DOI: 10.6092/kva0-xe59

Marine litter data collections of Micro Litter - DOI: 10.13120/q6t1-2r39

Marine litter data collections of Seafloor Litter - DOI: 10.13120/wgyh-sc94

 

Lastly, data collections are input to generate further data products.

Users are requested to acknowledge EMODnet and its data providers when using data or products based on its services.

Eutrophication

For Eutrophication, gridded climatologies are generated. They are spatially interpolated maps that display the depth variability of five variables over time:

• Dissolved inorganic nitrogen (DIN) concentration;
• Phosphate concentration;
• Silicate concentration;
• Chlorophyll-a concentration;
• Dissolved oxygen concentration.

The tools used are the 2-dimensional version of DIVA (Data Interpolating Variational Analysis) and its implemented version DIVAnd, which is the generalisation in n dimensions of the method (longitude, latitude, depth, time, etc.). All maps can be customised selecting both depth and time ranges. An animation of the temporal evolution of the parameters is also available. They are available to download as NetCDF, PNG, PDF, EPS, SVG, WebM (animation), MP4 (animation), and KML. The maps can be also visualised by using OGC WMS and OPeNDAP web services. Three main types of climatologies with different spatio-temporal resolutions can be downloaded:

• All European seas;
• By sea region;
• Coastal areas.

Contaminants

For contaminants, two types of maps are produced:

1. One displaying the spatial distribution of sampling stations for different matrices (seawater, biota, and sediment);
2. One that contributes to the evaluation of data quality and adequacy for environmental quality assessment according to the MSFD and the Directive on Environmental Quality Standards (EQSD).

The maps are available for ten selected substances: anthracene, benzo[A]pyrene, fluoranthene, hexachlorobenzene, naphthalene, DDT, lead, mercury, cadmium, and tributyltin.

Marine litter

For marine litter, maps display the spatial distribution, composition, and abundance of beach and seafloor litter. Products for beach litter are divided in two macro categories, depending on the origin of data: official monitoring (data considered for official evaluation and analysis with respect to the MSFD) and other sources (data from monitoring, cleaning and research activities). For abundance and density maps, an animation of the change over time is also available.

Background

EMODnet Chemistry is managed by a Consortium of partners, subcontractors and advisors. It is a network of marine research and monitoring institutes,  oceanographic data management experts, and the International Council for the Exploration of the Sea. The Consortium is also supported by the expertise of  the Regional Sea Conventions: OSPAR, HELCOM, BSC, and UNEP/MAP.

EMODnet Chemistry is largely based upon the SeaDataNet network of 110 National Oceanographic Data Centres: an operationally robust pan-European infrastructure for ocean and marine data management. Moreover, EMODnet Chemistry relies on and has adapted the following consolidated SeaDataNet services and standards.

Data gathering is conducted in direct communication with the data originators to ensure the best sets of measurement data and related metadata, and to prevent duplicates. Data originators are responsible for performing the first data quality control step and flagging with data quality information.

As a further step, a Quality Control (QC) loop is implemented to harmonise, standardise, and validate data and metadata at the European scale for marine litter data and at the regional scale for eutrophication, ocean acidification, and contaminant data.

Data validation and integration

Data quality

The network of data centres engaged in EMODnet Chemistry gathers marine chemistry datasets, both from marine environmental monitoring and scientific research. The data gathering is done in direct communication with data originators to ensure the best sets of measurement data and related metadata, and to prevent duplicates. Data originators are responsible for the first quality control of data and flagging with quality information.

As further step, a Quality Control (QC) loop is implemented to harmonize, standardize and validate data and metadata at European scale for marine litter and at regional scale for eutrophication, ocean acidification and contaminants. Data are extracted from the network of data centers into global data collections. The QC loop implies multiple validation steps as shown below:

EMODnet Chemistry - Quality Control Loop

Data are aggregated by grouping different analytic terms used by data originators into a unique agreed term with a unique measurement unit (e.g. ml/l for oxygen, umol/l for nitrate), and further quality controls are performed at regional level following a common approach.

A set of quality controls (QC) are applied and the results are communicated to the data providers to correct errors or anomalies in the original data. This feedback loop guarantees consistency among comprehensive databases, which include data from different sources, periods and geographic areas.

For eutrophication, ocean acidification and contaminants, the original measurement datasets are automatically harvested in six different European regions: Arctic Ocean, Baltic Sea, North Sea, Northeast Atlantic Ocean, Black Sea, and Mediterranean Sea. Resulting collections are aggregated and quality controlled by using ODV Software and the methodology illustrated above.

Each regional data collection is accessible through a digital object identifier (DOI) and is described in the Catalogue service where users can also browse, search and download the related data products.

The National Institute for Ocean Science (IFREMER) is leader of the marine litter data collections, supported by the National Institute of Oceanography and Applied Geophysics (OGS).

The guidelines provide details of the up-to-date methods and technologies that are used to generate the data products for eutrophication, ocean acidification, contaminants and marine litter.

This approach is regularly tuned in collaboration with experts on implementation of the MSFD, including the Regional Sea Conventions (RSCs), European Environment Agency (EEA), European Commission's Directorate General for the Environment (DG ENV), and European Commission's Joint Research Centre (EC JRC).

History

EMODnet Chemistry was launched in 2009 and is based on a step-by-step approach. In 2021, participants signed up to the fifth phase, which runs until 2023.

The illustration below shows the duration and gives a short description of the 5 phases.

EMODnet Chemistry - Phases

• The pilot phase, from June 2009 to June 2012, was aimed at testing the project feasibility in limited geographical areas on a restricted number of parameters.
• The second phase, from August 2013 to August 2016, was aimed at expanding spatial coverage and range of chemical parameters.
• The third phase, from March 2017 to March 2019, was aimed at extending the data focus, including Marine Litter data and data products, and the spatial coverage.
• The fourth phase, from October 2019 to October 2021, was aimed at gathering and managing new marine litter types and increasing engagements and cooperations.
• The fifth phase, from October 2021 to October 2023, is being led by the same core group of the Consortium steering the initiative since the beginning.

Detailed technical information on the various phases can be consulted from this document.